IL_5NDG_479
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDG_479 not in the Motif Atlas
- Homologous match to IL_8P9A_338
- Geometric discrepancy: 0.0895
- The information below is about IL_8P9A_338
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07469.2
- Basepair signature
- cWW-tSH-cWW-cSH-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5NDG|1|5|C|2889
5NDG|1|5|A|2890
5NDG|1|5|U|2891
5NDG|1|5|A|2892
*
5NDG|1|5|U|2909
5NDG|1|5|A|2910
5NDG|1|5|A|2911
5NDG|1|5|G|2912
5NDG|1|5|C|2913
5NDG|1|5|G|2914
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l3
- 60S ribosomal protein L3
- Chain n3
- 60S ribosomal protein L23-A
- Chain q0
- Ubiquitin-60S ribosomal protein L40
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