IL_5NDG_480

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUAU*AUUAAGC

Length

11 nucleotides

Bulged bases

5NDG|1|5|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDG|1|5|G|3328
5NDG|1|5|U|3329
5NDG|1|5|A|3330
5NDG|1|5|U|3331
*
5NDG|1|5|A|3372
5NDG|1|5|U|3373
5NDG|1|5|U|3374
5NDG|1|5|A|3375
5NDG|1|5|A|3376
5NDG|1|5|G|3377
5NDG|1|5|C|3378

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l3

60S ribosomal protein L3

Chain n4

60S ribosomal protein L24-A

Chain o1

60S ribosomal protein L31-A