IL_5NDG_483
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UG*UGA
- Length
- 5 nucleotides
- Bulged bases
- 5NDG|1|6|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDG_483 not in the Motif Atlas
- Geometric match to IL_8ZA0_002
- Geometric discrepancy: 0.3835
- The information below is about IL_8ZA0_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28408.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 69
Unit IDs
5NDG|1|6|U|1276
5NDG|1|6|G|1277
*
5NDG|1|6|U|1434
5NDG|1|6|G|1435
5NDG|1|6|A|1436
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c0
- 40S ribosomal protein S10-A
- Chain d0
- 40S ribosomal protein S20
- Chain d9
- 40S ribosomal protein S29-A
- Chain s3
- 40S ribosomal protein S3
- Chain sM
- Suppressor protein STM1
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