IL_5NDG_494

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

5NDG|1|5|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDG|1|5|U|169
5NDG|1|5|G|170
*
5NDG|1|5|U|248
5NDG|1|5|U|249
5NDG|1|5|U|250
5NDG|1|5|G|251
5NDG|1|5|U|252
5NDG|1|5|A|253

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain l8

60S ribosomal protein L8-A

Chain m3

60S ribosomal protein L13-A

Chain o5

60S ribosomal protein L35-A