IL_5NDJ_014
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UUC*GA
- Length
- 5 nucleotides
- Bulged bases
- 5NDJ|1|13|U|1009
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDJ_014 not in the Motif Atlas
- Geometric match to IL_4LFB_014
- Geometric discrepancy: 0.1299
- The information below is about IL_4LFB_014
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 129
Unit IDs
5NDJ|1|13|U|1008
5NDJ|1|13|U|1009
5NDJ|1|13|C|1010
*
5NDJ|1|13|G|1033
5NDJ|1|13|A|1034
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 69
- 50S ribosomal protein L9
- Chain 7I
- 30S ribosomal protein S16
Coloring options: