3D structure

PDB id
5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GGAACC*GGGUGCCCCGCGAGGGGAGCC
Length
27 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5NDJ|1|13|G|1626
5NDJ|1|13|G|1627
5NDJ|1|13|A|1628
5NDJ|1|13|A|1629
5NDJ|1|13|C|1630
5NDJ|1|13|C|1631
*
5NDJ|1|13|G|1646
5NDJ|1|13|G|1647
5NDJ|1|13|G|1648
5NDJ|1|13|U|1649
5NDJ|1|13|G|1650
5NDJ|1|13|C|1651
5NDJ|1|13|C|1652
5NDJ|1|13|C|1653
5NDJ|1|13|C|1654
5NDJ|1|13|G|1655
5NDJ|1|13|C|1656
5NDJ|1|13|G|1657
5NDJ|1|13|A|1658
5NDJ|1|13|G|1659
5NDJ|1|13|G|1660
5NDJ|1|13|G|1661
5NDJ|1|13|G|1662
5NDJ|1|13|A|1663
5NDJ|1|13|G|1664
5NDJ|1|13|C|1665
5NDJ|1|13|C|1666

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 14
Large subunit ribosomal RNA; LSU rRNA
Chain 2E
30S ribosomal protein S3

Coloring options:

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