IL_5NDJ_040
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GGAACC*GGGUGCCCCGCGAGGGGAGCC
- Length
- 27 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDJ|1|13|G|1626
5NDJ|1|13|G|1627
5NDJ|1|13|A|1628
5NDJ|1|13|A|1629
5NDJ|1|13|C|1630
5NDJ|1|13|C|1631
*
5NDJ|1|13|G|1646
5NDJ|1|13|G|1647
5NDJ|1|13|G|1648
5NDJ|1|13|U|1649
5NDJ|1|13|G|1650
5NDJ|1|13|C|1651
5NDJ|1|13|C|1652
5NDJ|1|13|C|1653
5NDJ|1|13|C|1654
5NDJ|1|13|G|1655
5NDJ|1|13|C|1656
5NDJ|1|13|G|1657
5NDJ|1|13|A|1658
5NDJ|1|13|G|1659
5NDJ|1|13|G|1660
5NDJ|1|13|G|1661
5NDJ|1|13|G|1662
5NDJ|1|13|A|1663
5NDJ|1|13|G|1664
5NDJ|1|13|C|1665
5NDJ|1|13|C|1666
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2E
- 30S ribosomal protein S3
Coloring options: