IL_5NDJ_071

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDJ_071 not in the Motif Atlas

Homologous match to IL_7RQB_009

Geometric discrepancy: 0.0985

The information below is about IL_7RQB_009

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

5NDJ|1|14|G|292
5NDJ|1|14|G|293
*
5NDJ|1|14|U|393
5NDJ|1|14|A|394
5NDJ|1|14|C|395

Current chains

Chain 14

23S ribosomal RNA

Nearby chains