IL_5NDJ_122
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CAA*UCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDJ_122 not in the Motif Atlas
- Homologous match to IL_7RQB_065
- Geometric discrepancy: 0.0751
- The information below is about IL_7RQB_065
- Detailed Annotation
- Isolated tWW turn
- Broad Annotation
- No text annotation
- Motif group
- IL_54997.7
- Basepair signature
- cWW-tWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
5NDJ|1|14|C|1713
5NDJ|1|14|A|1714
5NDJ|1|14|A|1715
*
5NDJ|1|14|U|2020
5NDJ|1|14|C|2021
5NDJ|1|14|G|2022
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 25
- 50S ribosomal protein L14
- Chain 29
- 50S ribosomal protein L3
- Chain 75
- 50S ribosomal protein L19
Coloring options: