IL_5NDJ_143

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUGGGAG*CGCCGGUGAAAUACCAC

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDJ|1|14|G|2146
5NDJ|1|14|U|2147
5NDJ|1|14|G|2148
5NDJ|1|14|G|2149
5NDJ|1|14|G|2150
5NDJ|1|14|A|2151
5NDJ|1|14|G|2152
*
5NDJ|1|14|C|2186
5NDJ|1|14|G|2187
5NDJ|1|14|C|2188
5NDJ|1|14|C|2189
5NDJ|1|14|G|2190
5NDJ|1|14|G|2191
5NDJ|1|14|U|2192
5NDJ|1|14|G|2193
5NDJ|1|14|A|2194
5NDJ|1|14|A|2195
5NDJ|1|14|A|2196
5NDJ|1|14|U|2197
5NDJ|1|14|A|2198
5NDJ|1|14|C|2199
5NDJ|1|14|C|2200
5NDJ|1|14|A|2201
5NDJ|1|14|C|2202

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain V4

Transfer RNA; tRNA