IL_5NDJ_144

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GCCUGUGAACC*GGGAGGC

Length

18 nucleotides

Bulged bases

5NDJ|1|14|U|2157, 5NDJ|1|14|G|2158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDJ|1|14|G|2152
5NDJ|1|14|C|2153
5NDJ|1|14|C|2154
5NDJ|1|14|U|2155
5NDJ|1|14|G|2156
5NDJ|1|14|U|2157
5NDJ|1|14|G|2158
5NDJ|1|14|A|2159
5NDJ|1|14|A|2160
5NDJ|1|14|C|2161
5NDJ|1|14|C|2162
*
5NDJ|1|14|G|2180
5NDJ|1|14|G|2181
5NDJ|1|14|G|2182
5NDJ|1|14|A|2183
5NDJ|1|14|G|2184
5NDJ|1|14|G|2185
5NDJ|1|14|C|2186

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA