IL_5NDJ_152
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDJ_152 not in the Motif Atlas
- Homologous match to IL_7RQB_094
- Geometric discrepancy: 0.1531
- The information below is about IL_7RQB_094
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_92788.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
5NDJ|1|14|A|2474
5NDJ|1|14|U|2475
5NDJ|1|14|C|2476
*
5NDJ|1|14|G|2504
5NDJ|1|14|G|2505
5NDJ|1|14|U|2506
5NDJ|1|14|U|2507
5NDJ|1|14|U|2508
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 45
- 50S ribosomal protein L16
- Chain E5
- 50S ribosomal protein L27
- Chain W4
- Transfer RNA; tRNA
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