IL_5NDJ_156

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

5NDJ|1|14|A|2587, 5NDJ|1|14|C|2588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDJ_156 not in the Motif Atlas

Homologous match to IL_7RQB_098

Geometric discrepancy: 0.1084

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

5NDJ|1|14|C|2527
5NDJ|1|14|G|2528
*
5NDJ|1|14|C|2586
5NDJ|1|14|A|2587
5NDJ|1|14|C|2588
5NDJ|1|14|G|2589

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 29

50S ribosomal protein L3

Chain W4

Transfer RNA; tRNA