IL_5NDJ_217

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUUGCCAGC*GGGCACUC

Length

17 nucleotides

Bulged bases

5NDJ|1|1G|U|1753, 5NDJ|1|1G|U|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDJ|1|1G|G|1752
5NDJ|1|1G|U|1753
5NDJ|1|1G|U|1754
5NDJ|1|1G|G|1755
5NDJ|1|1G|C|1756
5NDJ|1|1G|C|1757
5NDJ|1|1G|A|1758
5NDJ|1|1G|G|1759
5NDJ|1|1G|C|1760
*
5NDJ|1|1G|G|1770
5NDJ|1|1G|G|1771
5NDJ|1|1G|G|1772
5NDJ|1|1G|C|1773
5NDJ|1|1G|A|1774
5NDJ|1|1G|C|1775
5NDJ|1|1G|U|1776
5NDJ|1|1G|C|1777

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1A

30S ribosomal protein S10

Chain 82

30S ribosomal protein S9