IL_5NDJ_240

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGGACACC*GGUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDJ|1|1H|C|298
5NDJ|1|1H|G|299
5NDJ|1|1H|G|300
5NDJ|1|1H|A|301
5NDJ|1|1H|C|302
5NDJ|1|1H|A|303
5NDJ|1|1H|C|304
5NDJ|1|1H|C|305
*
5NDJ|1|1H|G|385
5NDJ|1|1H|G|386
5NDJ|1|1H|U|387
5NDJ|1|1H|G|388

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains