IL_5NDJ_261
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GCUAG*CAAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDJ_261 not in the Motif Atlas
- Homologous match to IL_5J7L_274
- Geometric discrepancy: 0.2547
- The information below is about IL_5J7L_274
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5NDJ|1|1H|G|924
5NDJ|1|1H|C|925
5NDJ|1|1H|U|926
5NDJ|1|1H|A|927
5NDJ|1|1H|G|928
*
5NDJ|1|1H|C|946
5NDJ|1|1H|A|947
5NDJ|1|1H|A|948
5NDJ|1|1H|A|949
5NDJ|1|1H|C|950
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 88
- 50S ribosomal protein L16
- Chain H8
- 50S ribosomal protein L25
- Chain W1
- Transfer RNA; tRNA
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