IL_5NDJ_269

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

5NDJ|1|1H|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDJ_269 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.1194

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

5NDJ|1|1H|G|1079
5NDJ|1|1H|A|1080
5NDJ|1|1H|U|1081
5NDJ|1|1H|G|1082
*
5NDJ|1|1H|C|1169
5NDJ|1|1H|G|1170
5NDJ|1|1H|C|1171

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6

Chain 88

50S ribosomal protein L16