IL_5NDJ_271

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

5NDJ|1|1H|G|1297

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDJ_271 not in the Motif Atlas

Homologous match to IL_7RQB_045

Geometric discrepancy: 0.0753

The information below is about IL_7RQB_045

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

5NDJ|1|1H|C|1244
5NDJ|1|1H|G|1245
5NDJ|1|1H|U|1246
*
5NDJ|1|1H|A|1296
5NDJ|1|1H|G|1297
5NDJ|1|1H|U|1298
5NDJ|1|1H|G|1299

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain 78

50S ribosomal protein L15

Chain C8

50S ribosomal protein L20