IL_5NDJ_305
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- ACGA*UCUAU
- Length
- 9 nucleotides
- Bulged bases
- 5NDJ|1|1H|C|2080, 5NDJ|1|1H|C|2627, 5NDJ|1|1H|U|2628
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDJ_305 not in the Motif Atlas
- Homologous match to IL_9DFE_079
- Geometric discrepancy: 0.0664
- The information below is about IL_9DFE_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70335.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NDJ|1|1H|A|2079
5NDJ|1|1H|C|2080
5NDJ|1|1H|G|2081
5NDJ|1|1H|A|2082
*
5NDJ|1|1H|U|2626
5NDJ|1|1H|C|2627
5NDJ|1|1H|U|2628
5NDJ|1|1H|A|2629
5NDJ|1|1H|U|2630
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 21
- 50S ribosomal protein L3
- Chain E8
- 50S ribosomal protein L22
- Chain N8
- 50S ribosomal protein L32
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