IL_5NDJ_310

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDJ_310 not in the Motif Atlas

Homologous match to IL_7RQB_084

Geometric discrepancy: 0.2998

The information below is about IL_7RQB_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDJ|1|1H|C|2133
5NDJ|1|1H|U|2134
5NDJ|1|1H|G|2135
*
5NDJ|1|1H|C|2204
5NDJ|1|1H|U|2205
5NDJ|1|1H|G|2206

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain V1

Transfer RNA; tRNA