IL_5NDJ_312

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUGUGAACCCCCGC*GUGGGGGGGAG

Length

25 nucleotides

Bulged bases

5NDJ|1|1H|U|2157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDJ|1|1H|C|2154
5NDJ|1|1H|U|2155
5NDJ|1|1H|G|2156
5NDJ|1|1H|U|2157
5NDJ|1|1H|G|2158
5NDJ|1|1H|A|2159
5NDJ|1|1H|A|2160
5NDJ|1|1H|C|2161
5NDJ|1|1H|C|2162
5NDJ|1|1H|C|2163
5NDJ|1|1H|C|2164
5NDJ|1|1H|C|2165
5NDJ|1|1H|G|2166
5NDJ|1|1H|C|2167
*
5NDJ|1|1H|G|2174
5NDJ|1|1H|U|2175
5NDJ|1|1H|G|2176
5NDJ|1|1H|G|2177
5NDJ|1|1H|G|2178
5NDJ|1|1H|G|2179
5NDJ|1|1H|G|2180
5NDJ|1|1H|G|2181
5NDJ|1|1H|G|2182
5NDJ|1|1H|A|2183
5NDJ|1|1H|G|2184

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 2I

30S ribosomal protein S11