IL_5NDJ_332

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CACGGCGUCAAGCCGGUAAG*CGAGG

Length

25 nucleotides

Bulged bases

5NDJ|1|1H|U|2812, 5NDJ|1|1H|C|2813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDJ|1|1H|C|2805
5NDJ|1|1H|A|2806
5NDJ|1|1H|C|2807
5NDJ|1|1H|G|2808
5NDJ|1|1H|G|2809
5NDJ|1|1H|C|2810
5NDJ|1|1H|G|2811
5NDJ|1|1H|U|2812
5NDJ|1|1H|C|2813
5NDJ|1|1H|A|2814
5NDJ|1|1H|A|2815
5NDJ|1|1H|G|2816
5NDJ|1|1H|C|2817
5NDJ|1|1H|C|2818
5NDJ|1|1H|G|2819
5NDJ|1|1H|G|2820
5NDJ|1|1H|U|2821
5NDJ|1|1H|A|2822
5NDJ|1|1H|A|2823
5NDJ|1|1H|G|2824
*
5NDJ|1|1H|C|2902
5NDJ|1|1H|G|2903
5NDJ|1|1H|A|2904
5NDJ|1|1H|G|2905
5NDJ|1|1H|G|2906

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3