IL_5NDJ_349

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CCGCGAAGACAGC*GUCGAGUGG

Length

22 nucleotides

Bulged bases

5NDJ|1|14|A|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDJ|1|14|C|1088
5NDJ|1|14|C|1089
5NDJ|1|14|G|1090
5NDJ|1|14|C|1091
5NDJ|1|14|G|1092
5NDJ|1|14|A|1093
5NDJ|1|14|A|1094
5NDJ|1|14|G|1095
5NDJ|1|14|A|1096
5NDJ|1|14|C|1097
5NDJ|1|14|A|1098
5NDJ|1|14|G|1099
5NDJ|1|14|C|1100
*
5NDJ|1|14|G|1155
5NDJ|1|14|U|1156
5NDJ|1|14|C|1157
5NDJ|1|14|G|1158
5NDJ|1|14|A|1159
5NDJ|1|14|G|1160
5NDJ|1|14|U|1161
5NDJ|1|14|G|1162
5NDJ|1|14|G|1163

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 59

50S ribosomal protein L6

Chain D5

50S ribosomal protein L25