IL_5NDJ_367

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAGUG*CUCAC

Length

42 nucleotides

Bulged bases

5NDJ|1|14|U|1109, 5NDJ|1|14|A|1115, 5NDJ|1|14|A|1118, 5NDJ|1|14|G|1119, 5NDJ|1|14|C|1120, 5NDJ|1|14|G|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDJ|1|14|G|1103
5NDJ|1|14|G|1104
5NDJ|1|14|A|1105
5NDJ|1|14|U|1106
5NDJ|1|14|G|1107
5NDJ|1|14|U|1108
5NDJ|1|14|U|1109
5NDJ|1|14|G|1110
5NDJ|1|14|G|1111
5NDJ|1|14|C|1112
5NDJ|1|14|U|1113
5NDJ|1|14|U|1114
5NDJ|1|14|A|1115
5NDJ|1|14|G|1116
5NDJ|1|14|A|1117
5NDJ|1|14|A|1118
5NDJ|1|14|G|1119
5NDJ|1|14|C|1120
5NDJ|1|14|A|1121
5NDJ|1|14|G|1122
5NDJ|1|14|C|1123
5NDJ|1|14|C|1124
5NDJ|1|14|A|1125
5NDJ|1|14|U|1126
5NDJ|1|14|C|1127
5NDJ|1|14|A|1128
5NDJ|1|14|U|1129
5NDJ|1|14|U|1130
5NDJ|1|14|U|1131
5NDJ|1|14|A|1132
5NDJ|1|14|A|1133
5NDJ|1|14|A|1134
5NDJ|1|14|G|1135
5NDJ|1|14|A|1136
5NDJ|1|14|G|1137
5NDJ|1|14|U|1138
5NDJ|1|14|G|1139
*
5NDJ|1|14|C|1148
5NDJ|1|14|U|1149
5NDJ|1|14|C|1150
5NDJ|1|14|A|1151
5NDJ|1|14|C|1152

Current chains

Chain 14

23S ribosomal RNA

Nearby chains