IL_5NDV_017

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAGAGG*CAUAAUG

Length

13 nucleotides

Bulged bases

5NDV|1|1|G|494

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDV|1|1|C|435
5NDV|1|1|A|436
5NDV|1|1|G|437
5NDV|1|1|A|438
5NDV|1|1|G|494
5NDV|1|1|G|495
*
5NDV|1|1|C|618
5NDV|1|1|A|619
5NDV|1|1|U|620
5NDV|1|1|A|621
5NDV|1|1|A|622
5NDV|1|1|U|623
5NDV|1|1|G|624

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L6

60S ribosomal protein L6-A

Chain M7

60S ribosomal protein L17-A

Chain O2

60S ribosomal protein L32

Chain O3

60S ribosomal protein L33-A