IL_5NDV_147

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGAUAAAAAAUCAAUGUCUUCGGACUCUUUG*CAU

Length

34 nucleotides

Bulged bases

5NDV|1|2|A|217, 5NDV|1|2|U|232, 5NDV|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDV|1|2|A|213
5NDV|1|2|G|214
5NDV|1|2|A|215
5NDV|1|2|U|216
5NDV|1|2|A|217
5NDV|1|2|A|218
5NDV|1|2|A|219
5NDV|1|2|A|220
5NDV|1|2|A|221
5NDV|1|2|A|222
5NDV|1|2|U|223
5NDV|1|2|C|224
5NDV|1|2|A|225
5NDV|1|2|A|226
5NDV|1|2|U|227
5NDV|1|2|G|228
5NDV|1|2|U|229
5NDV|1|2|C|230
5NDV|1|2|U|231
5NDV|1|2|U|232
5NDV|1|2|C|233
5NDV|1|2|G|234
5NDV|1|2|G|235
5NDV|1|2|A|236
5NDV|1|2|C|237
5NDV|1|2|U|238
5NDV|1|2|C|239
5NDV|1|2|U|240
5NDV|1|2|U|241
5NDV|1|2|U|242
5NDV|1|2|G|243
*
5NDV|1|2|C|250
5NDV|1|2|A|251
5NDV|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A