IL_5NDV_151

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

5NDV|1|2|C|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDV_151 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.3155

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5NDV|1|2|U|318
5NDV|1|2|U|319
5NDV|1|2|U|320
5NDV|1|2|C|321
5NDV|1|2|G|322
5NDV|1|2|A|323
*
5NDV|1|2|U|345
5NDV|1|2|G|346

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C1

40S ribosomal protein S11-A

Chain S8

40S ribosomal protein S8-A