IL_5NDV_198

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGC*GUUAUC

Length

10 nucleotides

Bulged bases

5NDV|1|2|U|1370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDV_198 not in the Motif Atlas

Geometric match to IL_7DLZ_006

Geometric discrepancy: 0.3589

The information below is about IL_7DLZ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76776.4

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5NDV|1|2|G|1352
5NDV|1|2|U|1353
5NDV|1|2|G|1354
5NDV|1|2|C|1355
*
5NDV|1|2|G|1368
5NDV|1|2|U|1369
5NDV|1|2|U|1370
5NDV|1|2|A|1371
5NDV|1|2|U|1372
5NDV|1|2|C|1373

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain C9

40S ribosomal protein S19-A

Chain D0

40S ribosomal protein S20