IL_5NDV_202

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAUAG*CUUCAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDV_202 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1114

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

5NDV|1|2|G|1540
5NDV|1|2|G|1541
5NDV|1|2|G|1542
5NDV|1|2|A|1543
5NDV|1|2|U|1544
5NDV|1|2|A|1545
5NDV|1|2|G|1546
*
5NDV|1|2|C|1565
5NDV|1|2|U|1566
5NDV|1|2|U|1567
5NDV|1|2|C|1568
5NDV|1|2|A|1569
5NDV|1|2|A|1570
5NDV|1|2|C|1571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C8

40S ribosomal protein S18-A

Chain C9

40S ribosomal protein S19-A