IL_5NDV_227
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AUCA*UGU
- Length
- 7 nucleotides
- Bulged bases
- 5NDV|1|5|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDV_227 not in the Motif Atlas
- Geometric match to IL_4KNQ_003
- Geometric discrepancy: 0.2169
- The information below is about IL_4KNQ_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.5
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 238
Unit IDs
5NDV|1|5|A|13
5NDV|1|5|U|14
5NDV|1|5|C|15
5NDV|1|5|A|16
*
5NDV|1|8|U|143
5NDV|1|8|G|144
5NDV|1|8|U|145
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain l8
- 60S ribosomal protein L8-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain n5
- 60S ribosomal protein L25
- Chain o5
- 60S ribosomal protein L35-A
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