IL_5NDV_234

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

5NDV|1|5|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDV_234 not in the Motif Atlas

Homologous match to IL_5TBW_010

Geometric discrepancy: 0.3887

The information below is about IL_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37379.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

5NDV|1|5|U|169
5NDV|1|5|G|170
*
5NDV|1|5|U|248
5NDV|1|5|U|249
5NDV|1|5|U|250
5NDV|1|5|G|251
5NDV|1|5|U|252
5NDV|1|5|A|253

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l8

60S ribosomal protein L8-A

Chain m3

60S ribosomal protein L13-A

Chain o5

60S ribosomal protein L35-A