IL_5NDV_238
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 5NDV|1|5|A|398, 5NDV|1|5|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDV_238 not in the Motif Atlas
- Geometric match to IL_5TBW_014
- Geometric discrepancy: 0.0727
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
5NDV|1|5|G|376
5NDV|1|5|A|377
5NDV|1|5|A|378
5NDV|1|5|C|379
*
5NDV|1|5|G|390
5NDV|1|5|A|391
5NDV|1|5|G|392
5NDV|1|5|U|393
5NDV|1|5|G|394
5NDV|1|5|A|395
5NDV|1|5|A|396
5NDV|1|5|A|397
5NDV|1|5|A|398
5NDV|1|5|A|399
5NDV|1|5|G|400
5NDV|1|5|U|401
5NDV|1|5|A|402
5NDV|1|5|C|403
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain m7
- 60S ribosomal protein L17-A
- Chain n6
- 60S ribosomal protein L26-A
- Chain o9
- 60S ribosomal protein L39
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