IL_5NDV_355

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUAGAG*CGAUC

Length

11 nucleotides

Bulged bases

5NDV|1|5|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDV|1|5|G|3340
5NDV|1|5|U|3341
5NDV|1|5|A|3342
5NDV|1|5|G|3343
5NDV|1|5|A|3344
5NDV|1|5|G|3345
*
5NDV|1|5|C|3360
5NDV|1|5|G|3361
5NDV|1|5|A|3362
5NDV|1|5|U|3363
5NDV|1|5|C|3364

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m9

60S ribosomal protein L19-A

Chain n2

60S ribosomal protein L22-A

Chain n4

60S ribosomal protein L24-A

Chain s8

40S ribosomal protein S8-A