IL_5NDV_464

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAAAAAUUA*UAUAUUAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDV|1|2|G|751
5NDV|1|2|A|752
5NDV|1|2|A|753
5NDV|1|2|A|754
5NDV|1|2|A|755
5NDV|1|2|A|756
5NDV|1|2|A|757
5NDV|1|2|U|758
5NDV|1|2|U|759
5NDV|1|2|A|760
*
5NDV|1|2|U|790
5NDV|1|2|A|791
5NDV|1|2|U|792
5NDV|1|2|A|793
5NDV|1|2|U|794
5NDV|1|2|U|795
5NDV|1|2|A|796
5NDV|1|2|G|797
5NDV|1|2|C|798

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain D2

40S ribosomal protein S22-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A