IL_5NDV_468

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGU*ACC

Length

7 nucleotides

Bulged bases

5NDV|1|2|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDV_468 not in the Motif Atlas

Geometric match to IL_7Y2B_003

Geometric discrepancy: 0.3053

The information below is about IL_7Y2B_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

5NDV|1|2|G|1051
5NDV|1|2|U|1052
5NDV|1|2|G|1053
5NDV|1|2|U|1054
*
5NDV|1|2|A|1065
5NDV|1|2|C|1066
5NDV|1|2|C|1067

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D7

40S ribosomal protein S27-A

Chain S1

40S ribosomal protein S1-A