IL_5NDV_478

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUAC*GAA

Length

7 nucleotides

Bulged bases

5NDV|1|5|A|1075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDV_478 not in the Motif Atlas

Geometric match to IL_7LYF_004

Geometric discrepancy: 0.3286

The information below is about IL_7LYF_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

5NDV|1|5|U|1073
5NDV|1|5|U|1074
5NDV|1|5|A|1075
5NDV|1|5|C|1076
*
5NDV|1|5|G|1083
5NDV|1|5|A|1084
5NDV|1|5|A|1085

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l5

60S ribosomal protein L5

Chain n1

60S ribosomal protein L21-A

Chain n9

60S ribosomal protein L29