IL_5NDV_480

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUAACA*UGGAAGA

Length

13 nucleotides

Bulged bases

5NDV|1|5|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDV|1|5|U|1694
5NDV|1|5|U|1695
5NDV|1|5|A|1696
5NDV|1|5|A|1697
5NDV|1|5|C|1698
5NDV|1|5|A|1699
*
5NDV|1|5|U|1746
5NDV|1|5|G|1747
5NDV|1|5|G|1748
5NDV|1|5|A|1749
5NDV|1|5|A|1750
5NDV|1|5|G|1751
5NDV|1|5|A|1752

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain o4

60S ribosomal protein L34-A

Chain o8

60S ribosomal protein L38