IL_5NDV_493

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AAUAAGGAUUG*CUUGAUUUU

Length

20 nucleotides

Bulged bases

5NDV|1|6|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDV|1|6|A|1223
5NDV|1|6|A|1224
5NDV|1|6|U|1225
5NDV|1|6|A|1226
5NDV|1|6|A|1227
5NDV|1|6|G|1228
5NDV|1|6|G|1229
5NDV|1|6|A|1230
5NDV|1|6|U|1231
5NDV|1|6|U|1232
5NDV|1|6|G|1233
*
5NDV|1|6|C|1252
5NDV|1|6|U|1253
5NDV|1|6|U|1254
5NDV|1|6|G|1255
5NDV|1|6|A|1256
5NDV|1|6|U|1257
5NDV|1|6|U|1258
5NDV|1|6|U|1259
5NDV|1|6|U|1260

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c0

40S ribosomal protein S10-A

Chain c2

40S ribosomal protein S12

Chain d9

40S ribosomal protein S29-A