IL_5NDV_496

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUGG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDV|1|6|G|1288
5NDV|1|6|U|1289
5NDV|1|6|U|1290
5NDV|1|6|G|1291
5NDV|1|6|G|1292
*
5NDV|1|6|C|1323
5NDV|1|6|G|1324
5NDV|1|6|A|1325
5NDV|1|6|A|1326
5NDV|1|6|C|1327

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c7

40S ribosomal protein S17-A

Chain s0

40S ribosomal protein S0-A

Chain s2

40S ribosomal protein S2

Chain s3

40S ribosomal protein S3