IL_5NDV_510

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

5NDV|1|2|A|1346, 5NDV|1|2|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDV_510 not in the Motif Atlas

Homologous match to IL_8CRE_481

Geometric discrepancy: 0.3405

The information below is about IL_8CRE_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.2

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

3

Unit IDs

5NDV|1|2|A|1345
5NDV|1|2|A|1346
5NDV|1|2|U|1347
5NDV|1|2|A|1348
*
5NDV|1|2|U|1377
5NDV|1|2|U|1378
5NDV|1|2|C|1379
5NDV|1|2|U|1380

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain D0

40S ribosomal protein S20