IL_5NDW_005
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 5NDW|1|1|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_005 not in the Motif Atlas
- Homologous match to IL_5TBW_005
- Geometric discrepancy: 0.0631
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5NDW|1|1|C|31
5NDW|1|1|U|32
5NDW|1|1|G|33
5NDW|1|1|A|34
5NDW|1|1|A|35
5NDW|1|1|C|36
5NDW|1|1|U|37
5NDW|1|1|U|38
*
5NDW|1|1|A|45
5NDW|1|1|U|46
5NDW|1|1|C|47
5NDW|1|1|A|48
5NDW|1|1|A|49
5NDW|1|1|U|50
5NDW|1|1|A|51
5NDW|1|1|A|52
5NDW|1|1|G|53
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M3
- 60S ribosomal protein L13-A
- Chain M5
- 60S ribosomal protein L15-A
- Chain N8
- 60S ribosomal protein L28
- Chain O7
- 60S ribosomal protein L37-A
- Chain Q2
- 60S ribosomal protein L42-A
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