IL_5NDW_058
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 5NDW|1|1|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_058 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.0668
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
5NDW|1|1|U|1388
5NDW|1|1|G|1389
5NDW|1|1|A|1390
5NDW|1|1|C|1391
5NDW|1|1|G|1392
5NDW|1|1|A|1393
5NDW|1|1|A|1394
5NDW|1|1|G|1395
*
5NDW|1|1|U|1415
5NDW|1|1|C|1416
5NDW|1|1|G|1417
5NDW|1|1|A|1418
5NDW|1|1|A|1419
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L4
- 60S ribosomal protein L4-A
- Chain L6
- 60S ribosomal protein L6-A
- Chain M7
- 60S ribosomal protein L17-A
- Chain N6
- 60S ribosomal protein L26-A
- Chain O2
- 60S ribosomal protein L32
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