IL_5NDW_073

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAAUAAUG*CUAUC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDW|1|1|G|1882
5NDW|1|1|A|1883
5NDW|1|1|A|1884
5NDW|1|1|U|1885
5NDW|1|1|A|1886
5NDW|1|1|A|1887
5NDW|1|1|U|1888
5NDW|1|1|G|1889
*
5NDW|1|1|C|2346
5NDW|1|1|U|2347
5NDW|1|1|A|2348
5NDW|1|1|U|2349
5NDW|1|1|C|2350

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain M7

60S ribosomal protein L17-A

Chain O1

60S ribosomal protein L31-A