IL_5NDW_084

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

5NDW|1|1|A|2208, 5NDW|1|1|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDW|1|1|C|2204
5NDW|1|1|U|2205
5NDW|1|1|G|2206
5NDW|1|1|A|2207
5NDW|1|1|A|2208
5NDW|1|1|U|2209
5NDW|1|1|G|2210
*
5NDW|1|1|C|2235
5NDW|1|1|G|2236
5NDW|1|1|C|2237
5NDW|1|1|G|2238

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain L2

60S ribosomal protein L2-A