IL_5NDW_093
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 5NDW|1|1|G|2522, 5NDW|1|1|G|2585, 5NDW|1|1|G|2586
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_093 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.117
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
5NDW|1|1|A|2520
5NDW|1|1|U|2521
5NDW|1|1|G|2522
5NDW|1|1|A|2523
5NDW|1|1|A|2524
5NDW|1|1|G|2525
5NDW|1|1|C|2526
*
5NDW|1|1|G|2584
5NDW|1|1|G|2585
5NDW|1|1|G|2586
5NDW|1|1|U|2587
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L2
- 60S ribosomal protein L2-A
- Chain L8
- 60S ribosomal protein L8-A
- Chain N5
- 60S ribosomal protein L25
Coloring options: