IL_5NDW_115

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CU*AUUG

Length

6 nucleotides

Bulged bases

5NDW|1|1|U|3078, 5NDW|1|1|U|3079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDW_115 not in the Motif Atlas

Homologous match to IL_8C3A_128

Geometric discrepancy: 0.1133

The information below is about IL_8C3A_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

5NDW|1|1|C|3063
5NDW|1|1|U|3064
*
5NDW|1|1|A|3077
5NDW|1|1|U|3078
5NDW|1|1|U|3079
5NDW|1|1|G|3080

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M9

60S ribosomal protein L19-A

Chain O1

60S ribosomal protein L31-A