IL_5NDW_167

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCCGGUC*GGAUUUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDW|1|2|G|652
5NDW|1|2|C|653
5NDW|1|2|C|654
5NDW|1|2|G|655
5NDW|1|2|G|656
5NDW|1|2|U|657
5NDW|1|2|C|658
*
5NDW|1|2|G|676
5NDW|1|2|G|677
5NDW|1|2|A|678
5NDW|1|2|U|679
5NDW|1|2|U|680
5NDW|1|2|U|681
5NDW|1|2|C|682

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S9

40S ribosomal protein S9-A