IL_5NDW_171

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

ACGUUU*AUCGU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDW|1|2|A|817
5NDW|1|2|C|818
5NDW|1|2|G|819
5NDW|1|2|U|820
5NDW|1|2|U|821
5NDW|1|2|U|822
*
5NDW|1|2|A|850
5NDW|1|2|U|851
5NDW|1|2|C|852
5NDW|1|2|G|853
5NDW|1|2|U|854

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M9

60S ribosomal protein L19-A

Chain S7

40S ribosomal protein S7-A