IL_5NDW_178
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GGGAUC*GUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_178 not in the Motif Atlas
- Geometric match to IL_4V88_435
- Geometric discrepancy: 0.0939
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5NDW|1|2|G|985
5NDW|1|2|G|986
5NDW|1|2|G|987
5NDW|1|2|A|988
5NDW|1|2|U|989
5NDW|1|2|C|990
*
5NDW|1|2|G|1014
5NDW|1|2|U|1015
5NDW|1|2|C|1016
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C4
- 40S ribosomal protein S14-B
- Chain D6
- 40S ribosomal protein S26-B
- Chain L2
- 60S ribosomal protein L2-A
- Chain Q3
- 60S ribosomal protein L43-A
Coloring options: