IL_5NDW_385

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDW_385 not in the Motif Atlas

Homologous match to IL_4V88_405

Geometric discrepancy: 0.101

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

5NDW|1|6|G|389
5NDW|1|6|G|390
5NDW|1|6|A|391
*
5NDW|1|6|U|406
5NDW|1|6|A|407
5NDW|1|6|C|408

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain s6

40S ribosomal protein S6-A

Chain s8

40S ribosomal protein S8-A