IL_5NDW_421
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GUC*GUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_421 not in the Motif Atlas
- Homologous match to IL_4V88_446
- Geometric discrepancy: 0.0665
- The information below is about IL_4V88_446
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
5NDW|1|6|G|1213
5NDW|1|6|U|1214
5NDW|1|6|C|1215
*
5NDW|1|6|G|1448
5NDW|1|6|U|1449
5NDW|1|6|U|1450
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c0
- 40S ribosomal protein S10-A
- Chain c5
- 40S ribosomal protein S15
- Chain d9
- 40S ribosomal protein S29-A
- Chain e1
- Ubiquitin-40S ribosomal protein S31
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